INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN988494 | Rhizobium phage RHph_TM3_3_12 | 6034 | 58.452 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium etli T3_12 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN988495 | Rhizobium phage RHph_TM3_3_13 | 67917 | 56.482 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli T3_13 | High-quality | High-quality | 97.830 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988496 | Rhizobium phage RHph_TM3_3_14B | 59457 | 58.893 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli T3_14 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_23 |
| MN988497 | Rhizobium phage RHph_Y2_6 | 78314 | 45.427 | Rhizobium | Group I | Acanvirus | Acanvirus | Demetervirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli Y2_6 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Acanvirus | Acanvirus Y26 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988498 | Rhizobium phage RHph_Y3_19 | 6034 | 58.469 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium phaseoli Y3_19 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN988499 | Rhizobium phage RHph_TM1_20A | 6034 | 58.552 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium etli T1_20 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN988500 | Rhizobium phage RHph_Y55 | 54496 | 56.002 | Rhizobium | Group I | Kleczkowskavirus | Kleczkowskavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli IE6845 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kleczkowskavirus | Kleczkowskavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988501 | Rhizobium phage RHph_Y3_43 | 54023 | 56.489 | Rhizobium | Group I | Kleczkowskavirus | Kleczkowskavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli Y3_43 | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | Kleczkowskavirus | Kleczkowskavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988502 | Rhizobium phage RHph_Y3_56_1 | 40181 | 58.508 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli Y3_56 | Medium-quality | Genome-fragment | 67.290 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_20 |
| MN988503 | Rhizobium phage RHph_Y3_56_2 | 6034 | 58.469 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium phaseoli Y3_56 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |