INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN988484 | Rhizobium phage RHph_Y60 | 69093 | 56.505 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli TAL182 | High-quality | High-quality | 99.530 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988485 | Rhizobium phage RHph_Y67 | 4801 | 56.697 | Rhizobium | Group II | Piticivirus | Piticivirus | Unclassified | Mazaviridae | Amoyvirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium phaseoli TUX10P | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | unknown | |||
| MN988486 | Rhizobium phage RHph_Y68 | 152762 | 49.387 | Rhizobium | Group I | Trinifflemingvirus | Trinifflemingvirus | Staniewskivirinae | Pootjesviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium sp. TUX16P | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | Trinifflemingvirus | Trinifflemingvirus Y68 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988487 | Rhizobium phage RHph_Y1_10 | 43230 | 57.904 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli Y1_10 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_16 |
| MN988488 | Rhizobium phage RHph_Y1_20 | 45999 | 56.114 | Rhizobium | Group I | Tepoztlanvirus | Tepoztlanvirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli Y1_20 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tepoztlanvirus | Tepoztlanvirus RHphY120 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988489 | Rhizobium phage RHph_Y2_19 | 6034 | 58.485 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium phaseoli Y2_19 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN988490 | Rhizobium phage RHph_Y3_1 | 40173 | 58.497 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli Y3_1 | Medium-quality | Genome-fragment | 67.280 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_20 |
| MN988491 | Rhizobium phage RHph_Y3_36 | 6034 | 58.452 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium phaseoli Y3_36 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN988492 | Rhizobium phage RHph_TM33 | 46454 | 49.188 | Rhizobium | Group I | Cuernavacavirus | Cuernavacavirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium sp. R339 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cuernavacavirus | Cuernavacavirus RHphTM33 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988493 | Rhizobium phage RHph_TM38 | 46454 | 49.188 | Rhizobium | Group I | Cuernavacavirus | Cuernavacavirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli BRASIL5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cuernavacavirus | Cuernavacavirus RHphTM33 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |