INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MN536027	Pseudomonas phage vB_Pae-SS2019XII	39701	63.608	Pseudomonas	Group I	Mechnikovvirus	Mechnikovvirus	Guarnerosvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mechnikovvirus	Mechnikovvirus SS2019XII	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_40
MN539721	Sulfolobus super-elliptical virus	15365	33.433	Sulfolobus	Unclassified	Fuselloviridae	Unclassified	Unclassified	Fuselloviridae	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Sulfolobus islandicus Y08.80.36	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_4;integrase orf_14
MN539736	Staphylococcus phage vB_SauM-A	139088	30.458	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus ATCC 6538	Complete	High-quality	100.000	DTR (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN539737	Staphylococcus phage vB_SauM-C	140086	30.426	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus ATCC 6538	High-quality	High-quality	98.930	AAI-based (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN539738	Staphylococcus phage vB_SauM-D	139031	30.451	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus ATCC 6538	High-quality	High-quality	98.180	AAI-based (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN545971	Citrobacter phage HCF1	45806	44.509	Citrobacter	Group I	Hicfunavirus	Hicfunavirus	Unclassified	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter amalonaticus	High-quality	High-quality	92.300	AAI-based (high-confidence)	Hicfunavirus	Hicfunavirus HCF1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN549360	Rhizobium phage RL38J1	158577	49.816	Rhizobium	Group I	Innesvirus	Innesvirus	Unclassified	Pootjesviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizobium leguminosarum	High-quality	High-quality	100.000	AAI-based (high-confidence)	Innesvirus	Innesvirus RL38J1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN549361	Rhizobium phage RL2RES	156878	49.971	Rhizobium	Group I	Innesvirus	Innesvirus	Unclassified	Pootjesviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizobium leguminosarum	High-quality	High-quality	100.000	AAI-based (high-confidence)	Innesvirus	Innesvirus RL2RES	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN552143	Lactococcus phage P1046	54289	34.105	Lactococcus	Group I	Fremauxvirus	Fremauxvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	97.650	AAI-based (high-confidence)	Fremauxvirus	Fremauxvirus CHPC971	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN552144	Lactococcus phage P1045	31050	36.135	Lactococcus	Group I	Vedamuthuvirus	Vedamuthuvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vedamuthuvirus	Vedamuthuvirus P1045	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_2;antirepressor orf_3;antirepressor orf_7