INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MN369759	Mycobacterium phage Mithril	70937	68.954	Mycobacterium	Group I	Coopervirus	Coopervirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coopervirus	Coopervirus brownCNA	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN369760	Mycobacterium phage KyMonks1A	52145	63.619	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_38;immunity orf_76
MN369761	Mycobacterium phage Malthus	57802	67.904	Mycobacterium	Group I	Fionnbharthvirus	Fionnbharthvirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fionnbharthvirus	Fionnbharthvirus fionnbharth	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_43;immunity orf_45;cro orf_46
MN369762	Mycobacterium phage Bryler	57666	66.098	Mycobacterium	Group I	Unicornvirus	Unicornvirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	94.110	AAI-based (high-confidence)	Unicornvirus	Unicornvirus bryler	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_40;immunity orf_43;cro orf_44
MN369763	Mycobacterium phage Aliter	50480	62.716	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	95.410	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	parA orf_32
MN369764	Mycobacterium phage Rahalelujah	52816	62.400	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.420	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	immunity orf_74
MN369765	Microbacterium phage Zanella	42108	67.013	Microbacterium	Group I	Goodmanvirus	Goodmanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	99.720	AAI-based (high-confidence)	Goodmanvirus	Goodmanvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN369766	Gordonia phage Yndexa	66184	66.193	Gordonia	Group I	Sukkupivirus	Sukkupivirus	Emilbogenvirinae	Zierdtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	99.270	AAI-based (high-confidence)	Sukkupivirus	Sukkupivirus sukkupi	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN379460	Vibrio phage Rostov M3	31129	45.797	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio cholerae O1 Classical	Medium-quality	Genome-fragment	69.970	AAI-based (high-confidence)	Comeauvirus	Comeauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN379461	Vibrio phage Rostov M3	12308	45.734	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio cholerae O1 Classical	Low-quality	Genome-fragment	27.670	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic