INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN369749 | Mycobacterium phage MinionDave | 58027 | 61.496 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus miniondave | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_40;integrase orf_42;immunity orf_44;cro orf_45 |
| MN369750 | Streptomyces phage TomSawyer | 133961 | 49.274 | Streptomyces | Group I | Karimacvirus | Karimacvirus | Boydwoodruffvirinae | Stanwilliamsviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus ATCC 10137 | Complete | High-quality | 100.000 | DTR (high-confidence) | Karimacvirus | Karimacvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN369751 | Mycobacterium phage TDanisky | 56275 | 61.233 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.720 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus sparkdehlily | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_45;immunity orf_47;antirepressor orf_48 |
| MN369752 | Mycobacterium phage Flathead | 57663 | 61.181 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_38;integrase orf_45;cro orf_48 |
| MN369753 | Gordonia phage Sukkupi | 66184 | 66.194 | Gordonia | Group I | Sukkupivirus | Sukkupivirus | Emilbogenvirinae | Zierdtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.270 | AAI-based (high-confidence) | Sukkupivirus | Sukkupivirus sukkupi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN369754 | Streptomyces phage Limpid | 131038 | 47.556 | Streptomyces | Group I | Annadreamyvirus | Annadreamyvirus | Loccivirinae | Stanwilliamsviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces sanglieri UNT16F27A | Complete | High-quality | 100.000 | DTR (high-confidence) | Annadreamyvirus | Annadreamyvirus annadreamy | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN369755 | Mycobacterium phage Minnie | 59268 | 61.485 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus minnie | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_41;immunity orf_45;antirepressor orf_46;integrase orf_47 |
| MN369756 | Gordonia phage Anon | 52661 | 62.509 | Gordonia | Group I | Soupsvirus | Soupsvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.640 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | parA orf_33;immunity orf_77 |
| MN369757 | Streptomyces phage Bordeaux | 131317 | 49.489 | Streptomyces | Group I | Karimacvirus | Karimacvirus | Boydwoodruffvirinae | Stanwilliamsviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus ATCC 10137 | Complete | High-quality | 100.000 | DTR (high-confidence) | Karimacvirus | Karimacvirus karimac | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN369758 | Gordonia phage NHagos | 59580 | 68.216 | Gordonia | Group I | Nhagosvirus | Nhagosvirus | Durvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 97.330 | AAI-based (high-confidence) | Nhagosvirus | Nhagosvirus nhagos | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |