INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN310546 | Microbacterium phage PhriedRice | 54546 | 59.682 | Microbacterium | Group I | Akonivirus | Akonivirus | Eekayvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Akonivirus | Akonivirus phedro | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN310547 | Mycobacterium phage Hutc2 | 51393 | 63.777 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.370 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | parA orf_30;immunity orf_68 |
| MN310548 | Mycobacterium phage Juice456 | 56726 | 61.612 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_38;integrase orf_41;immunity orf_43;antirepressor orf_44 |
| MN310549 | Gordonia phage Gibbous | 45810 | 60.537 | Gordonia | Group I | Aziravirus | Aziravirus | Ceeteevirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Aziravirus | Aziravirus gibbous | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN311487 | Antarctic microvirus CAA_003_V_1 | 4288 | 38.619 | Unspecified | Group II | Picryovirus | Picryovirus | Unclassified | Pichoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 96.750 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN311488 | Antarctic microvirus CAA_003_V_4 | 4135 | 43.071 | Unspecified | Group II | Piglaglavirus | Piglaglavirus | Unclassified | Pichoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 95.480 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN311489 | Antarctic microvirus CAA_003_V_9 | 4254 | 39.539 | Unspecified | Group II | Picaglacivirus | Picaglacivirus | Unclassified | Pichoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 90.880 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN311490 | Antarctic microvirus COCH21_V_SP_13 | 4317 | 47.047 | Unspecified | Group II | Microvirus | Microvirus | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 97.390 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN311491 | Antarctic microvirus COCH21_V_SP_16 | 4201 | 42.561 | Unspecified | Group II | Microvirus | Microvirus | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 96.930 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN311492 | Antarctic microvirus TYR_006_V_25 | 4281 | 38.192 | Unspecified | Group II | Microvirus | Microvirus | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 96.710 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |