INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN252582 | Salmonella phage LPST144 | 39050 | 49.078 | Salmonella | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium ATCC 13311 | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus SalMLPST153 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN263053 | Xanthomonas phage phiLF | 6009 | 59.943 | Xanthomonas | Group II | Lophivirus | Lophivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Xanthomonas campestris pv. campestris | High-quality | High-quality | 95.680 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN266305 | Shigella phage SGF3 | 5386 | 44.838 | Shigella | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Shigella flexneri | High-quality | High-quality | 91.680 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN270258 | Streptococcus phage phi-SgaBSJ27_rum | 110666 | 38.618 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus gallolyticus BSJ27 | Low-quality | Genome-fragment | 41.510 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_50 |
| MN270259 | Streptococcus phage phi-SgaBSJ31_rum | 106491 | 38.702 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus gallolyticus BSJ31 | Low-quality | Genome-fragment | 41.540 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_50 |
| MN270260 | Streptococcus phage phi-SsuFJNP3_rum | 56838 | 39.211 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis FJNP3 | Complete | High-quality | 100.000 | Provirus (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_56 |
| MN270261 | Streptococcus phage phi-SsuFJNP8_rum | 77200 | 39.383 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis FJNP8 | Medium-quality | Genome-fragment | 62.920 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MN270262 | Streptococcus phage phi-SsuFJNP9_rum | 56838 | 39.211 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis FJNP9 | Complete | High-quality | 100.000 | Provirus (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_56 |
| MN270263 | Streptococcus phage phi-SsuFJSM5_rum | 49769 | 40.198 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis FJSM5 | Medium-quality | Genome-fragment | 77.760 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_45 |
| MN270264 | Streptococcus phage phi-SsuFJSM7_rum | 49769 | 40.198 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis FJSM7 | Medium-quality | Genome-fragment | 77.760 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_45 |