INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MN234168	Arthrobacter phage Ingrid	56953	50.740	Arthrobacter	Group I	Gordonvirus	Gordonvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis NRRL B-2979 SEA	High-quality	High-quality	98.610	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MN234169	Mycobacterium phage Naji	49127	63.541	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	93.500	AAI-based (high-confidence)	Fromanvirus	Fromanvirus D29	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_31
MN234170	Mycobacterium phage MalagasyRose	54301	65.264	Mycobacterium	Group I	Malagasyrosevirus	Malagasyrosevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Malagasyrosevirus	Malagasyrosevirus malagasyrose	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_39
MN234171	Mycobacterium phage Magpie	71014	68.996	Mycobacterium	Group I	Coopervirus	Coopervirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coopervirus	Coopervirus bane1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN234172	Mycobacterium phage ThulaThula	50415	66.530	Mycobacterium	Group I	Phayoncevirus	Phayoncevirus	Pclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phayoncevirus	Phayoncevirus thulathula	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_34;antirepressor orf_37
MN234173	Arthrobacter phage Sporto	54780	51.581	Arthrobacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis NRRL B-2979 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MN234174	Mycobacterium phage Efra2	61284	66.557	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Anayavirus	Anayavirus yunkel11	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_42
MN234175	Arthrobacter phage Stayer	54507	51.713	Arthrobacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis NRRL B-2979 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MN234176	Mycobacterium phage Yuna	62192	67.441	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Anayavirus	Anayavirus yuna	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_43;immunity orf_46;cro orf_47
MN234177	Microbacterium phage Gershwin	41555	63.393	Microbacterium	Group I	Ilzatvirus	Ilzatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus ilzat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic