INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MN224566	Mycobacterium phage Herbertwm	51546	62.598	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium aichiense ATCC 27280	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	immunity orf_65
MN227145	Salmonella phage BPSELC-1	86996	38.814	Salmonella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	98.820	AAI-based (high-confidence)	Felixounavirus	Felixounavirus BPSELC1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN228696	Sinorhizobium phage ort11	75239	44.246	Sinorhizobium	Group I	Huelvavirus	Huelvavirus	Unclassified	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Sinorhizobium meliloti Ort11	High-quality	High-quality	99.310	AAI-based (high-confidence)	Huelvavirus	Huelvavirus ort11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN234161	Gordonia phage Toast	49604	66.785	Gordonia	Group I	Fairfaxidumvirus	Fairfaxidumvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	99.150	AAI-based (high-confidence)	Fairfaxidumvirus	Fairfaxidumvirus toast	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37
MN234162	Gordonia phage GretelLyn	67605	58.077	Gordonia	Group I	Lambovirus	Lambovirus	Dovevirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia rubripertincta NRRL B-16540 SEA	High-quality	High-quality	99.680	AAI-based (high-confidence)	Lambovirus	Lambovirus sadboi	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN234163	Microbacterium phage Calix	41555	63.355	Microbacterium	Group I	Ilzatvirus	Ilzatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus ilzat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN234164	Arthrobacter phage Yeezus	59171	52.950	Arthrobacter	Group I	Amigovirus	Amigovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	Complete	High-quality	100.000	DTR (high-confidence)	Amigovirus	Amigovirus amigo	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MN234165	Mycobacterium phage Yunkel11	60757	66.559	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.230	AAI-based (high-confidence)	Anayavirus	Anayavirus yunkel11	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_43
MN234166	Gordonia phage ASerpRocky	74355	59.211	Gordonia	Group I	Demosthenesvirus	Demosthenesvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia westfalica NRRL B-24152	Complete	High-quality	100.000	DTR (high-confidence)	Demosthenesvirus	Demosthenesvirus demosthenes	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN234167	Mycobacterium phage Vanisoa	53370	62.486	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	parA orf_33;immunity orf_71