INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN062720 | Microbacterium phage FuzzBuster | 54844 | 68.037 | Microbacterium | Group I | Fuzzbustervirus | Fuzzbustervirus | Unclassified | Hodgkinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fuzzbustervirus | Fuzzbustervirus fuzzbuster | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_84 |
| MN065183 | Bacillus phage vB_BthS-HD29phi | 32181 | 34.856 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis | High-quality | High-quality | 95.060 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_2;antirepressor orf_12 |
| MN066127 | Salmonella phage Matapan | 157408 | 44.937 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN067333 | Escherichia phage Lyz12581Vzw | 62668 | 50.137 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O145 | High-quality | High-quality | 94.970 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_12;antirepressor orf_15;antirepressor orf_36;antirepressor orf_53;antirepressor orf_54;antirepressor orf_55;integrase orf_61 |
| MN067430 | Escherichia phage vB_EcoP-Ro103C3lw | 39389 | 52.840 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O103 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus EcoPRo103C3lw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MN070121 | Salmonella phage Shemara | 44342 | 51.143 | Salmonella | Group I | Cornellvirus | Cornellvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cornellvirus | Cornellvirus shemara | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN078104 | Bacteroides phage Barc2635 | 45990 | 38.878 | Bacteroides | Group I | Gotuavirus | Gotuavirus | Cardingvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacteroides fragilis | High-quality | High-quality | 99.040 | AAI-based (high-confidence) | Gotuavirus | Gotuavirus Barc2635 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_26 |
| MN080711 | Escherichia phage vB_Eco_D226 | 40050 | 48.409 | Escherichia | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus D226 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN082624 | Bacillus phage VioletteMad | 26061 | 30.125 | Bacillus | Group I | Claudivirus | Claudivirus | Northropvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis kurstaki | High-quality | High-quality | 99.290 | AAI-based (high-confidence) | Claudivirus | Claudivirus konjotrouble | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN082625 | Bacillus phage Karezi | 20083 | 37.305 | Bacillus | Group I | Karezivirus | Karezivirus | Tatarstanvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis kurstaki | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Karezivirus | Karezivirus karezi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |