INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MK967388	Microbacterium phage Velene	41798	63.403	Microbacterium	Group I	Ilzatvirus	Ilzatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus teagan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK967389	Gordonia phage JasperJr	49894	67.188	Gordonia	Group I	Jujuvirus	Jujuvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae CAG3	High-quality	High-quality	98.410	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_38
MK967390	Gordonia phage Beaver	77394	58.884	Gordonia	Group I	Montyvirus	Montyvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia rubripertincta NRRL B-16540	Complete	High-quality	100.000	DTR (high-confidence)	Montyvirus	Montyvirus beaver	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK967391	Microbacterium phage BonesMcCoy	41797	63.361	Microbacterium	Group I	Ilzatvirus	Ilzatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus teagan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK967392	Gordonia phage GrandSlam	50919	67.032	Gordonia	Group I	Betterkatzvirus	Betterkatzvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Betterkatzvirus	Betterkatzvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_37
MK967393	Rhodococcus phage Whack	49660	61.911	Rhodococcus	Group I	Whackvirus	Whackvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis NRRL B-1574	High-quality	High-quality	100.000	AAI-based (high-confidence)	Whackvirus	Whackvirus whack	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_37
MK967394	Microbacterium phage HanSolo	41516	63.443	Microbacterium	Group I	Ilzatvirus	Ilzatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus ilzat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK967395	Mycobacterium phage WideWale	53040	63.503	Mycobacterium	Group I	Turbidovirus	Turbidovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Turbidovirus	Turbidovirus centaur	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_69
MK967396	Gordonia phage Tangerine	57306	68.244	Gordonia	Group I	Kroosvirus	Kroosvirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	97.540	AAI-based (high-confidence)	Kroosvirus	Kroosvirus tangerine	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MK967397	Mycobacterium phage Mahavrat	55945	61.285	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.100	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus mahavrat	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37;antirepressor orf_40