INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK962635 | Achromobacter phage vB_AxyS_19-32_Axy18 | 45500 | 56.218 | Achromobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans I2BC | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK962636 | Achromobacter phage vB_AxyS_19-32_Axy19 | 46036 | 56.045 | Achromobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans I2BC | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK962637 | Achromobacter phage vB_AxyS_19-32_Axy20 | 46352 | 56.138 | Achromobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans I2BC | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK962638 | Achromobacter phage vB_AxyP_19-32_Axy21 | 43049 | 64.324 | Achromobacter | Group I | Axyvirus | Axyvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans I2BC | Complete | High-quality | 100.000 | DTR (high-confidence) | Axyvirus | Axyvirus 1932Axy21 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK962639 | Achromobacter phage vB_AxyP_19-32_Axy22 | 71710 | 54.373 | Achromobacter | Group I | Pourcelvirus | Pourcelvirus | Rothmandenesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans I2BC | Complete | High-quality | 100.000 | DTR (high-confidence) | Pourcelvirus | Pourcelvirus Axy11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK962640 | Achromobacter phage vB_AxyP_19-32_Axy23 | 43773 | 64.510 | Achromobacter | Group I | Axyvirus | Axyvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans I2BC | Complete | High-quality | 100.000 | DTR (high-confidence) | Axyvirus | Axyvirus 1932Axy23 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK962641 | Achromobacter phage vB_AxyP_19-32_Axy24 | 74744 | 54.918 | Achromobacter | Group I | Dongdastvirus | Dongdastvirus | Rothmandenesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans I2BC | Complete | High-quality | 100.000 | DTR (high-confidence) | Dongdastvirus | Dongdastvirus Axy24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK962749 | Shigella phage CM1 | 139598 | 43.535 | Shigella | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli DH5alpha | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus CM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK962750 | Shigella phage CM8 | 167247 | 35.280 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21 | High-quality | High-quality | 99.430 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus cm8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK962751 | Shigella phage JK16 | 51854 | 44.546 | Shigella | Group I | Warwickvirus | Warwickvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli DH5alpha | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Warwickvirus | Warwickvirus JK16 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |