INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK937608 | Microbacterium phage Cressida | 55957 | 70.299 | Microbacterium | Group I | Mementomorivirus | Mementomorivirus | Kutznervirinae | Hodgkinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mementomorivirus | Mementomorivirus cressida | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK937609 | Gordonia phage Sekhmet | 47735 | 66.079 | Gordonia | Group I | Beenievirus | Beenievirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.010 | AAI-based (high-confidence) | Beenievirus | Beenievirus sekhmet | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_39;immunity orf_43;antirepressor orf_46 |
| MK937610 | Microbacterium phage Arroyo | 42129 | 66.607 | Microbacterium | Group I | Dismasvirus | Dismasvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MK937611 | Gordonia phage Verity | 61248 | 67.418 | Gordonia | Group I | Zitchvirus | Zitchvirus | Schenleyvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Zitchvirus | Zitchvirus verity | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK937612 | Mycobacterium phage LilhomieP | 81071 | 61.583 | Mycobacterium | Group I | Bongovirus | Bongovirus | Mclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.190 | AAI-based (high-confidence) | Bongovirus | Bongovirus bongo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_106 |
| MK937613 | Corynebacterium phage StAB | 45751 | 67.861 | Corynebacterium | Group I | Samwavirus | Samwavirus | Frobishervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium xerosis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Samwavirus | Samwavirus StAB | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_27 |
| MK940809 | Staphylococcus phage Sa2wa_st8 | 45914 | 33.121 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 18751 | Complete | High-quality | 100.000 | DTR (high-confidence) | Triavirus | Triavirus P240 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_31 |
| MK942064 | Caulobacter phage Jess A | 45011 | 64.329 | Caulobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter vibrioides CB15 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK947458 | Salmonella phage vB_SenS_SB10 | 111347 | 40.057 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | Epseptimavirus | Epseptimavirus SB10 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK947459 | Salmonella phage vB_SenS_SB13 | 112513 | 39.921 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 99.460 | AAI-based (high-confidence) | Epseptimavirus | Epseptimavirus SB13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |