INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK864267 | Gordonia phage Valary | 59448 | 67.787 | Gordonia | Group I | Wizardvirus | Wizardvirus | Frickvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Wizardvirus | Wizardvirus valary | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_24;integrase orf_46;integrase orf_49 |
| MK867354 | Synechococcus phage S-SCSM1 | 228827 | 36.842 | Synechococcus | Group I | Zhoulongquanvirus | Zhoulongquanvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Zhoulongquanvirus | Zhoulongquanvirus esscess | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK867835 | Salmonella phage vB_SenS_SB9 | 113979 | 39.911 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Saintpaul | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Epseptimavirus | Epseptimavirus SB9 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK875791 | Gordonia phage Yakult | 47197 | 62.873 | Gordonia | Group I | Margaretvirus | Margaretvirus | Ceeteevirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | Margaretvirus | Margaretvirus yakult | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK875792 | Mycobacterium phage Polka14 | 58758 | 61.438 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus polka14 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42 |
| MK875794 | Microbacterium phage Chepli | 40332 | 62.990 | Microbacterium | Group I | Neferthenavirus | Neferthenavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum | High-quality | High-quality | 99.810 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK875795 | Gordonia phage Agatha | 46543 | 60.153 | Gordonia | Group I | Emalynvirus | Emalynvirus | Ceeteevirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Emalynvirus | Emalynvirus cozz | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK875796 | Gordonia phage Tayonia | 50320 | 66.653 | Gordonia | Group I | Nymphadoravirus | Nymphadoravirus | Nymbaxtervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 95.910 | AAI-based (high-confidence) | Nymphadoravirus | Nymphadoravirus kita | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_39;immunity orf_44;antirepressor orf_48 |
| MK875797 | Gordonia phage Haley23 | 46221 | 66.621 | Gordonia | Group I | Attisvirus | Attisvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Attisvirus | Attisvirus ebert | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_42 |
| MK875798 | Microbacterium phage Piperis | 53241 | 68.862 | Microbacterium | Group I | Quhwahvirus | Quhwahvirus | Unclassified | Hodgkinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 99.140 | AAI-based (high-confidence) | Quhwahvirus | Quhwahvirus honeyfin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |