INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK801734 | Gordonia phage LordFarquaad | 47863 | 66.826 | Gordonia | Group I | Attisvirus | Attisvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Attisvirus | Attisvirus attis | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_34;immunity orf_39;antirepressor orf_43 |
| MK801735 | Mycobacterium Phage Rachaly | 52009 | 63.433 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | parA orf_35;immunity orf_66 |
| MK803322 | Pseudomonas phage RSP | 63016 | 56.051 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK804891 | Aeromonas phage 2_D05 | 43233 | 56.360 | Aeromonas | Group I | Kunmingvirus | Kunmingvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas rivipollensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kunmingvirus | Kunmingvirus kv2D05 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_53 |
| MK804892 | Aeromonas phage 4_D05 | 42249 | 55.987 | Aeromonas | Group I | Kunmingvirus | Kunmingvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas rivipollensis | High-quality | High-quality | 98.150 | AAI-based (high-confidence) | Kunmingvirus | Kunmingvirus kv4D05 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_46 |
| MK804893 | Aeromonas phage 2L372D | 122963 | 35.294 | Aeromonas | Group I | Plateaulakevirus | Plateaulakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila;Aeromonas hydrophilla | Complete | High-quality | 100.000 | DTR (high-confidence) | Plateaulakevirus | Plateaulakevirus pv2L372D | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK809530 | Salmonella phage vB_SenS_SB6 | 112311 | 39.944 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Javiana | High-quality | High-quality | 99.280 | AAI-based (high-confidence) | Epseptimavirus | Epseptimavirus seafire | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK813938 | Aeromonas phage 2L372X | 115893 | 35.558 | Aeromonas | Group I | Plateaulakevirus | Plateaulakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | High-quality | High-quality | 94.900 | AAI-based (high-confidence) | Plateaulakevirus | Plateaulakevirus pv2L372X | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK813939 | Aeromonas phage 4L372D | 138690 | 35.062 | Aeromonas | Group I | Plateaulakevirus | Plateaulakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Plateaulakevirus | Plateaulakevirus pv4L372D | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK813940 | Aeromonas phage 4_L372X | 45698 | 48.744 | Aeromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | High-quality | High-quality | 97.860 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |