INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK801724 | Gordonia phage PhrostedPhlake | 52042 | 67.376 | Gordonia | Group I | Jujuvirus | Jujuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_41 |
| MK801725 | Gordonia phage Yago84 | 61890 | 70.016 | Gordonia | Group I | Westmeadvirus | Westmeadvirus | Santaclaravirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.950 | AAI-based (high-confidence) | Anclarvirus | Anclarvirus anclar | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK801726 | Mycobacterium phage ChotaBhai | 76145 | 62.906 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_50;immunity orf_53 |
| MK801727 | Gordonia phage ThankyouJordi | 53453 | 66.355 | Gordonia | Group I | Nymphadoravirus | Nymphadoravirus | Nymbaxtervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nymphadoravirus | Nymphadoravirus thankyoujordi | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;antirepressor orf_44 |
| MK801728 | Gordonia phage Gorko | 75158 | 58.986 | Gordonia | Group I | Montyvirus | Montyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Montyvirus | Montyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK801729 | Gordonia phage Clark | 47716 | 66.531 | Gordonia | Group I | Beenievirus | Beenievirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.100 | AAI-based (high-confidence) | Beenievirus | Beenievirus clark | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_34;integrase orf_37;immunity orf_41;antirepressor orf_44 |
| MK801730 | Microbacterium phage Belthelas | 17502 | 68.598 | Microbacterium | Group I | Paopuvirus | Paopuvirus | Pelczarvirinae | Orlajensenviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Paopuvirus | Paopuvirus quaker | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK801731 | Microbacterium phage Anakin | 56665 | 63.773 | Microbacterium | Group I | Krampusvirus | Krampusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Krampusvirus | Krampusvirus krampus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK801732 | Microbacterium phage NarutoRun | 56665 | 63.770 | Microbacterium | Group I | Krampusvirus | Krampusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Krampusvirus | Krampusvirus krampus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK801733 | Gordonia phage Chelms | 76261 | 58.583 | Gordonia | Group I | Montyvirus | Montyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Montyvirus | Montyvirus chelms | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |