INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PZ483753	Staphylococcus phage vB_SauS_MDR13	42459	33.112	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus aureus MDR13	High-quality	High-quality	99.840	AAI-based (high-confidence)	Biseptimavirus	Biseptimavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_7;integrase orf_16;integrase orf_47
PZ483003	Pseudomonas phage vB_PaeM_CCA4	66050	55.567	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pbunavirus	Pbunavirus E217	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ482472	Salmonella phage VHK-052022	157351	44.742	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella sp.	High-quality	High-quality	99.550	AAI-based (high-confidence)	Kuttervirus	Kuttervirus SenASZ3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ482443	Pseudomonas phage vB_PaeS_PhiSGPa5	94112	55.219	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa	Complete	High-quality	100.000	DTR (high-confidence)	Samunavirus	Samunavirus SM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ482436	Agrobacterium phage Burgred	187777	42.851	Agrobacterium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Agrobacterium tumefaciens A016	High-quality	High-quality	100.000	AAI-based (medium-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_159;integrase orf_210
PZ482434	Pseudomonas phage NTUH-P9	43323	62.281	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa PAV06	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phikmvvirus	Phikmvvirus HX1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ481759	Klebsiella phage vB_KpnP-SPI_G66	39566	50.741	Klebsiella	Group I	Teetrevirus	Teetrevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Teetrevirus	Teetrevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ481758	Klebsiella phage vB_KpnP-SPI_KBKp12	41010	52.826	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ481757	Klebsiella phage vB_KpnP-SPI_1047	40866	53.272	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ481756	Klebsiella phage vB_KpnP-SPI_1627	40919	53.134	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic