INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PZ239607 | Staphylococcus phage SapYZUs182 | 45220 | 33.534 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus aureus | High-quality | High-quality | 96.730 | AAI-based (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;cro orf_30;cro orf_31;antirepressor orf_33;integrase orf_70 |
| PZ239606 | Staphylococcus phage SapYZUs20 | 41109 | 33.963 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus aureus | High-quality | High-quality | 97.100 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_22;cro orf_27;antirepressor orf_31 |
| PZ239587 | Paenibacillus phage vB_PlaS-4/A | 41147 | 41.551 | Paenibacillus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Paenibacillus larvae 453 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus shelly | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_33;antirepressor orf_37;antirepressor orf_41;integrase orf_60 |
| PZ239393 | Staphylococcus phage Se42 | 18180 | 30.083 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Andhravirus | Andhravirus besep3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ239392 | Staphylococcus phage Se20 | 46299 | 34.683 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ239381 | Vibrio phage vB_VowS_SH14CR | 75908 | 48.802 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio owensii SH14 | High-quality | High-quality | 99.060 | AAI-based (high-confidence) | Mardecavirus | Mardecavirus SSP002 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PZ239144 | Pectobacterium phage Cerasus | 46056 | 50.697 | Pectobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pectobacterium versatile B422 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Teetrevirus | Teetrevirus IME305 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ236374 | Mycobacterium phage NovoPizza | 56527 | 70.078 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ236373 | Streptomyces phage LilSaint | 132797 | 49.710 | Streptomyces | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Streptomyces mirabilis NRRL B-2400 | Complete | High-quality | 100.000 | DTR (high-confidence) | Samistivirus | Samistivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ236372 | Streptomyces phage Shynx | 53993 | 68.268 | Streptomyces | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Streptomyces mirabilis NRRL B-2400 | High-quality | High-quality | 99.520 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |