INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PZ242158	Escherichia phage vB_EcoM_SVMS_56	138091	43.569	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli	High-quality	High-quality	98.430	AAI-based (high-confidence)	Vequintavirus	Vequintavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ242037	Klebsiella phage vB.Kpn.Y10	40074	52.293	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae Y10	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ239915	Escherichia phage Ecol_54	36820	44.460	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Eschrichia coli 181	Medium-quality	Genome-fragment	80.170	AAI-based (high-confidence)	Veterinaerplatzvirus	Veterinaerplatzvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PZ239914	Escherichia phage Ecol_81	44852	54.733	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Eschrichia coli 1319	High-quality	High-quality	100.000	AAI-based (high-confidence)	Dhillonvirus	Dhillonvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ239913	Escherichia phage Ecol_96	48836	45.550	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli 13127	High-quality	High-quality	97.540	AAI-based (high-confidence)	Tunavirus	Tunavirus T1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ239912	Escherichia phage i11m	163206	35.365	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Eschrichia coli PCM 2674	High-quality	High-quality	97.030	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ239611	Staphylococcus phage SapYZUs91	40154	34.223	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus aureus	High-quality	High-quality	94.800	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_22;cro orf_26;antirepressor orf_28
PZ239610	Staphylococcus phage SapYZUs241	41032	33.954	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus aureus	High-quality	High-quality	96.930	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_22;cro orf_27;antirepressor orf_31
PZ239609	Staphylococcus phage SapYZUs242	40154	34.231	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus aureus	High-quality	High-quality	94.800	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_22;cro orf_26;antirepressor orf_28
PZ239608	Staphylococcus phage SapYZUs11	45784	33.335	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus aureus	High-quality	High-quality	97.980	AAI-based (high-confidence)	Triavirus	Triavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;cro orf_30;antirepressor orf_34;integrase orf_71