INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP514360 | Escherichia phage HK1 | 44319 | 54.559 | Escherichia | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | Dhillonvirus | Dhillonvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP505787 | Klebsiella phage vB_KM5a1_KLB13 | 174344 | 41.906 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. M5a1 | High-quality | High-quality | 97.860 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus eap3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP505786 | Klebsiella phage vB_KM5a1_KLB10 | 174281 | 41.764 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. M5a1 | High-quality | High-quality | 97.820 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus matisse | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP504835 | Salmonella phage SAL_R1 | 59518 | 56.605 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | Complete | High-quality | 100.000 | DTR (high-confidence) | Chivirus | Chivirus ER24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_14 |
| PP504668 | Pseudomonas phage vB_PaeM_H24-1 | 66281 | 55.674 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Pbunavirus | Pbunavirus LS1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP503414 | Salmonella phage Sephi301i | 48674 | 41.926 | Salmonella | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Infantis | Complete | High-quality | 100.000 | DTR (high-confidence) | Tlsvirus | Tlsvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_19 |
| PP502935 | Salmonella phage vB_SpuM_X5 | 118240 | 39.405 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Pullorum | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus ABTNLsp9 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PP502408 | Proteus phage vB_PMC-PL1 | 103381 | 38.487 | Proteus | Group I | Novosibvirus | Novosibvirus | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis B2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Novosibvirus | Novosibvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP501792 | Pseudomonas phage vB_Pae9718-KEN10 | 43118 | 62.206 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa MRSN 9718 | Complete | High-quality | 100.000 | DTR (high-confidence) | Phikmvvirus | Phikmvvirus S1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP501791 | Pseudomonas phage vB_Pae10145-KEN1 | 43406 | 62.312 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa ATCC 10145 | Complete | High-quality | 100.000 | DTR (high-confidence) | Phikmvvirus | Phikmvvirus PA69 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |