INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP526940 | Mycolicibacterium phage Vic9 | 67543 | 69.032 | Mycolicibacterium | Group I | Rosebushvirus | Rosebushvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.960 | AAI-based (high-confidence) | Rosebushvirus | Rosebushvirus godines | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP526765 | Escherichia phage HK3 | 86422 | 39.006 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 98.150 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP526179 | Bacillus phage phi3T-SPBeta hybrid | 127729 | 34.936 | Bacillus | Group I | Spbetavirus | Spbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis | High-quality | High-quality | 99.820 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_30;integrase orf_91;antirepressor orf_105 |
| PP526178 | Bacillus phage phi3T | 126968 | 34.979 | Bacillus | Group I | Spbetavirus | Spbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis | High-quality | High-quality | 99.330 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_28;integrase orf_89;antirepressor orf_103 |
| PP526029 | Klebsiella phage vB_KM5a1_KLB19 | 52663 | 49.933 | Klebsiella | Group I | Vilniusvirus | Vilniusvirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. M5a1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vilniusvirus | Vilniusvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP526028 | Klebsiella phage vB_KM5a1_KLB15 | 174800 | 41.830 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. M5a1 | High-quality | High-quality | 98.110 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus kp15 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP516625 | Yersinia phage vB_YpM_MHG38 | 29826 | 53.765 | Yersinia | Group I | Eganvirus | Eganvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis EV76-CN | High-quality | High-quality | 94.050 | AAI-based (high-confidence) | Eganvirus | Eganvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28 |
| PP516624 | Yersinia phage vB_YpM_MDG45 | 29697 | 53.743 | Yersinia | Group I | Eganvirus | Eganvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis EV76-CN | Complete | High-quality | 100.000 | DTR (high-confidence) | Eganvirus | Eganvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_27 |
| PP516623 | Yersinia phage vB_YpM_MDG94-186 | 29570 | 53.717 | Yersinia | Group I | Eganvirus | Eganvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis EV76-CN | High-quality | High-quality | 93.250 | AAI-based (high-confidence) | Eganvirus | Eganvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| PP514361 | Escherichia phage HK2 | 69993 | 42.826 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 96.900 | AAI-based (high-confidence) | Gamaleyavirus | Gamaleyavirus Hk2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |