INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP906173 | Ceduovirus sp. '56006' | 21816 | 35.831 | Unspecified | Group I | Ceduovirus | Ceduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 99.490 | AAI-based (high-confidence) | Ceduovirus | Ceduovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP906172 | Skunavirus sp. 'svUCCL624' | 28819 | 34.408 | Unspecified | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus cremoris 3107 | High-quality | High-quality | 95.030 | AAI-based (high-confidence) | Skunavirus | Skunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP906171 | Skunavirus sv62601 | 30908 | 34.606 | Unspecified | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus cremoris 3107 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skunavirus | Skunavirus sv62601 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP906170 | Lactococcus phage sk713 | 29726 | 34.431 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus cremoris NZ9000 | High-quality | High-quality | 97.980 | AAI-based (high-confidence) | Skunavirus | Skunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP906169 | Lactococcus phage c2 | 21518 | 36.337 | Lactococcus | Group I | Ceduovirus | Ceduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus cremoris NZ9000 | High-quality | High-quality | 98.250 | AAI-based (high-confidence) | Ceduovirus | Ceduovirus PCS1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP906168 | Skunavirus sv66901 | 31156 | 34.552 | Unspecified | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus cremoris 3107 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skunavirus | Skunavirus sv66901 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP906167 | Lactococcus phage SK1 | 28451 | 34.508 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus cremoris NZ9000 | High-quality | High-quality | 93.820 | AAI-based (high-confidence) | Skunavirus | Skunavirus sk1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP906166 | Lactococcus virus P2 | 27595 | 34.727 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus cremoris NZ9000 | High-quality | High-quality | 91.000 | AAI-based (high-confidence) | Skunavirus | Skunavirus sk1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP906165 | Lactococcus phage P008 | 28538 | 34.677 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 94.070 | AAI-based (high-confidence) | Skunavirus | Skunavirus P008 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP898111 | Acinetobacter phage phi9102 | 52239 | 38.102 | Acinetobacter | Group I | Vieuvirus | Vieuvirus | Unclassified | Buchnerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii 9102 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_44 |