INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP935705 | Salmonella phage vB_SE130_1P | 42023 | 50.018 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Enteritidis P125088 | High-quality | High-quality | 98.120 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP935704 | Salmonella phage vB_SE126_2P | 15914 | 50.741 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Enteritidis P125588 | Low-quality | Genome-fragment | 37.090 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PP935703 | Salmonella phage vB_SE126_1P | 42023 | 50.025 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Enteritidis P125588 | High-quality | High-quality | 98.120 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP934564 | Klebsiella phage RothD | 46356 | 53.104 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae 80528 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nakavirus | Nakavirus sapi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;cro orf_45 |
| PP934563 | Klebsiella phage RothC | 46433 | 53.104 | Klebsiella | Group I | Nakavirus | Nakavirus | Unclassified | Felixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 80528 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nakavirus | Nakavirus sapi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;cro orf_46 |
| PP934445 | Klebsiella phage P287 | 50637 | 50.706 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae KP670 | Complete | High-quality | 100.000 | DTR (high-confidence) | Webervirus | Webervirus BUCT705 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP934444 | Klebsiella phage P284 | 44578 | 53.858 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae KP670 | Complete | High-quality | 100.000 | DTR (high-confidence) | Drulisvirus | Drulisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP934443 | Klebsiella phage P252 | 43944 | 53.976 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae KP56563 | Complete | High-quality | 100.000 | DTR (high-confidence) | Drulisvirus | Drulisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP934186 | Vibrio phage P018-4 | 126958 | 35.582 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | High-quality | High-quality | 98.300 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP932687 | Salmonella phage vB_SalP_LDDK01 | 42378 | 49.516 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella sp. LCDS2201 | Complete | High-quality | 100.000 | DTR (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |