INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PP974338	Klebsiella phage FKP10	159358	46.572	Klebsiella	Group I	Taipeivirus	Taipeivirus	Unclassified	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae ST307 (carbapenem-resistant)	High-quality	High-quality	100.000	AAI-based (high-confidence)	Taipeivirus	Taipeivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP974226	Klebsiella phage vB_KpP_AttikonH1N2	44177	54.388	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Drulisvirus	Drulisvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP974225	Klebsiella phage vB_KpP_AttikonH1	43637	54.598	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Drulisvirus	Drulisvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP973870	Klebsiella phage JLBP1001	48944	50.486	Klebsiella	Group I	Webervirus	Webervirus	Unclassified	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae (2023 JLKP186)	High-quality	High-quality	98.780	AAI-based (high-confidence)	Webervirus	Webervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP973485	Clostridium phage CpP_VarHS	17814	28.298	Clostridium	Group I	Gregsiragusavirus	Gregsiragusavirus	Denniswatsonvirinae	Guelinviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium perfringens	High-quality	High-quality	96.360	AAI-based (high-confidence)	Gregsiragusavirus	Gregsiragusavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP971806	Escherichia phage GaoY1-9D	50368	46.462	Escherichia	Group I	Nouzillyvirus	Nouzillyvirus	Unclassified	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli (avian pathogenic)	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
PP971698	Staphylococcus phage Pel11	40219	35.670	Staphylococcus	Group I	Coventryvirus	Coventryvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus hyicus	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_2;antirepressor orf_10
PP971649	Mycolicibacterium phage phi1_186019	54765	61.194	Mycolicibacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	95.100	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_35;immunity orf_37;antirepressor orf_38
PP968062	Pseudomonas phage HPP-Temi	302719	46.455	Pseudomonas	Group I	Pawinskivirus	Pawinskivirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	98.870	AAI-based (high-confidence)	Pawinskivirus	Pawinskivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP965502	Acinetobacter phage AB_SZL2	41359	39.302	Acinetobacter	Group I	Beijerinckvirinae	Unclassified	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii NAB01B	High-quality	High-quality	99.850	AAI-based (high-confidence)	Friunavirus	Friunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic