Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PQ154629Bacillus phage JackRabbit16155238.749BacillusGroup I WphvirusWphvirusBastillevirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus thuringiensis serovar kurstakiCompleteHigh-quality100.000DTR (high-confidence) WphvirusWphvirus megatronThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PQ152681Salmonella phage vB_Sen_ZC104277849.642SalmonellaGroup I JerseyvirusJerseyvirusGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enterica serovar EnteritidisHigh-qualityHigh-quality99.840AAI-based (high-confidence) JerseyvirusJerseyvirus ZCSE9Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ152316Lactiplantibacillus phage SAASZH114313936.483LactiplantibacillusGroup I HarbinvirusHarbinvirusUnclassifiedHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactiplantibacillus plantarumHigh-qualityHigh-quality100.000AAI-based (high-confidence) HarbinvirusHarbinvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ149445Pseudomonas phage BL76602955.017PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PAKCompleteHigh-quality100.000DTR (high-confidence) PbunavirusPbunavirus EPa61Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ149444Pseudomonas phage BL66641455.059PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PAKCompleteHigh-quality100.000DTR (high-confidence) PbunavirusPbunavirus EPa61Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ144889Pseudomonas phage NEU20246186464.267PseudomonasGroup I YuavirusYuavirusRabinowitzvirinaeMesyanzhinovviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) YuavirusYuavirus NEU2024Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ144888Pseudomonas phage NEU2023706759.615PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PQ143174Staphylococcus phage C1P44374336.097StaphylococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus pseudintermedius Sps4(18/z)High-qualityHigh-quality100.000AAI-based (medium-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_24
PQ141284Escherichia phage fEg-Eco064549150.766EscherichiaGroup I KagunavirusKagunavirusGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli #5522High-qualityHigh-quality100.000AAI-based (high-confidence) KagunavirusKagunavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PQ141064Campylobacter phage vB_Cco_UoN_SoBS_A616619927.845CampylobacterGroup I FirehammervirusFirehammervirusUnclassifiedConnertonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Campylobacter coli LL-SB7High-qualityHigh-quality92.990AAI-based (high-confidence) FirehammervirusFirehammervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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