Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PZ428597Tsukamurella phage HKU26025031270.160TsukamurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Tsukamurella tyrosinosolvens P4YN1CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PZ428596Tsukamurella phage HKU26016570969.776TsukamurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Tsukamuerlla asaccharolytica HKU71High-qualityHigh-quality95.370AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_81
PZ428103Salmonella phage PZ-13894150.207SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphiCompleteHigh-quality100.000DTR (high-confidence) KayfunavirusKayfunavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PZ417139Cereibacter phage phiR3-PR5267852.555CereibacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Cereibacter sphaeroides 2.4.1 & 7001 (synonym: Rhodobacter sphaeroides)CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PZ412363Pseudomonas phage vB_PaeS_CCA24501552.554PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosaHigh-qualityHigh-quality99.250AAI-based (high-confidence) BruynoghevirusBruynoghevirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ406332Klebsiella phage vB_KpnD_I303_1004945350.310KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae I303High-qualityHigh-quality99.810AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ406331Klebsiella phage vB_KpnD_4640_1154780950.691KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae 4640High-qualityHigh-quality96.490AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ406330Klebsiella phage vB_KpnD_NSC294-115R1_L02D_SYN1075007350.736KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae NSC294-115R1_L02-DHigh-qualityHigh-quality100.000AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ406329Klebsiella phage vB_KpnD_NSC294-115R1_L02A_SYN1044970150.013KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae NSC294-115R1_L02-AHigh-qualityHigh-quality100.000AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ406328Klebsiella phage vB_KpnD_13_L01D_SYN1034912550.449KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae 13_L01-DHigh-qualityHigh-quality99.160AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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