Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PZ436094Enterobacteria phage phiHS215736246.401EnterobacteriaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Escherichia coli HSHigh-qualityHigh-quality99.580AAI-based (high-confidence) TaipeivirusTaipeivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ436093Escherichia phage phiHS16031644.746EscherichiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Escherichia coli HSHigh-qualityHigh-quality100.000AAI-based (high-confidence) SeuratvirusSeuratvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ435572Vibrio phage vB_VpS_PP284-27599648.830VibrioUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Vibrio parahaemolyticus vp284High-qualityHigh-quality99.180AAI-based (high-confidence) MardecavirusMardecavirus SSP002The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PZ433559Klebsiella phage CP-p-KP-210134067852.783KlebsiellaGroup I PrzondovirusPrzondovirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) PrzondovirusPrzondovirus NLZS2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ428603Tsukamurella phage HKU26087103360.649TsukamurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Tsukamurella tyrosinosolvens ZCJ230615Medium-qualityGenome-fragment79.900HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_124
PZ428602Tsukamurella phage HKU26077001764.399TsukamurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Tsukamurella soli JCM 17688Medium-qualityGenome-fragment81.940HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_27
PZ428601Tsukamurella phage HKU26064740459.497TsukamurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Tsukamurella paurometabola 3OWLow-qualityGenome-fragment40.820HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingslytic
PZ428600Tsukamurella phage HKU26054915369.548TsukamurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Tsukamurella ocularis CIP111612T1High-qualityHigh-quality95.750AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_37;integrase orf_72
PZ428599Tsukamurella phage HKU26044915369.548TsukamurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Tsukamurella ocularis PW1005High-qualityHigh-quality95.750AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_37;integrase orf_72
PZ428598Tsukamurella phage HKU26034865269.228TsukamurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Tsukamurella ocularis PW1007High-qualityHigh-quality100.000AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_35;integrase orf_71
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