INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PZ436094 | Enterobacteria phage phiHS2 | 157362 | 46.401 | Enterobacteria | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli HS | High-quality | High-quality | 99.580 | AAI-based (high-confidence) | Taipeivirus | Taipeivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ436093 | Escherichia phage phiHS1 | 60316 | 44.746 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli HS | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Seuratvirus | Seuratvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ435572 | Vibrio phage vB_VpS_PP284-2 | 75996 | 48.830 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio parahaemolyticus vp284 | High-quality | High-quality | 99.180 | AAI-based (high-confidence) | Mardecavirus | Mardecavirus SSP002 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PZ433559 | Klebsiella phage CP-p-KP-21013 | 40678 | 52.783 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Przondovirus | Przondovirus NLZS2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ428603 | Tsukamurella phage HKU2608 | 71033 | 60.649 | Tsukamurella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Tsukamurella tyrosinosolvens ZCJ230615 | Medium-quality | Genome-fragment | 79.900 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_124 |
| PZ428602 | Tsukamurella phage HKU2607 | 70017 | 64.399 | Tsukamurella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Tsukamurella soli JCM 17688 | Medium-quality | Genome-fragment | 81.940 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_27 |
| PZ428601 | Tsukamurella phage HKU2606 | 47404 | 59.497 | Tsukamurella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Tsukamurella paurometabola 3OW | Low-quality | Genome-fragment | 40.820 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ428600 | Tsukamurella phage HKU2605 | 49153 | 69.548 | Tsukamurella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Tsukamurella ocularis CIP111612T1 | High-quality | High-quality | 95.750 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_37;integrase orf_72 |
| PZ428599 | Tsukamurella phage HKU2604 | 49153 | 69.548 | Tsukamurella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Tsukamurella ocularis PW1005 | High-quality | High-quality | 95.750 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_37;integrase orf_72 |
| PZ428598 | Tsukamurella phage HKU2603 | 48652 | 69.228 | Tsukamurella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Tsukamurella ocularis PW1007 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_35;integrase orf_71 |