INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PQ336902 | Salmonella phage CHRF_10023.1 | 45880 | 46.170 | Salmonella | Group I | Macdonaldcampvirus | Macdonaldcampvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi strain BRD948 | High-quality | High-quality | 97.800 | AAI-based (high-confidence) | Macdonaldcampvirus | Macdonaldcampvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_67 |
| PQ336901 | Salmonella phage CHRF_10022 | 39761 | 50.859 | Salmonella | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi strain BRD948 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ330092 | Escherichia phage JP4 | 370741 | 34.320 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli O157:H7 | High-quality | High-quality | 98.380 | AAI-based (high-confidence) | Asteriusvirus | Asteriusvirus PBECO4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ329252 | Klebsiella phage vB_XU-P2 | 43917 | 54.091 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ327946 | Escherichia phage XH12 | 170505 | 37.563 | Escherichia | Group I | Mosigvirus | Mosigvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Mosigvirus | Mosigvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ316073 | Pseudomonas phage KT1 | 40573 | 57.694 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas sp. KT_2_4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_25 |
| PQ314494 | Aeromonas phage vB_AhyM_UALMA_PCAh2 | 45282 | 57.796 | Aeromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Aeromonas hydrophila ATCC 7966 | High-quality | High-quality | 95.420 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_6;cro orf_7;parA orf_11 |
| PQ314493 | Escherichia phage vB_EcoS_UALMA_PCEc3 | 44679 | 44.421 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ATCC 25922 | High-quality | High-quality | 96.440 | AAI-based (high-confidence) | Loudonvirus | Loudonvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ314492 | Vibrio phage vB_VpaS_UALMA_PCVp3 | 45076 | 43.538 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus O22C | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PQ314491 | Salmonella phage vB_SeEM_UALMA_PCSE1 | 69920 | 45.233 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Enteritidis ATCC CVB | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |