INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PQ421477 | Aeromonas phage vB_AdhaP_MF | 41667 | 55.725 | Aeromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas dhakensis CECT 7289 | Complete | High-quality | 100.000 | DTR (high-confidence) | Aerosvirus | Aerosvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ417133 | Pseudomonas phage vB_VIPPAETPH1 | 66340 | 55.609 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa OMCS-21-1583 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus LS1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ417132 | Escherichia phage vB_VIPECOTH07 | 44205 | 50.811 | Escherichia | Group I | Kagunavirus | Kagunavirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli OMCS-22-1338 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kagunavirus | Kagunavirus ligaya | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ416618 | Escherichia phage vB_VIPECOMC06 | 166719 | 37.510 | Escherichia | Group I | Mosigvirus | Mosigvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ATCC 11229 | High-quality | High-quality | 98.080 | AAI-based (high-confidence) | Mosigvirus | Mosigvirus lindsay | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ415074 | Pseudomonas phage Baskent_P6 | 64144 | 63.580 | Pseudomonas | Group I | Hollowayvirus | Hollowayvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Hollowayvirus | Hollowayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36 |
| PQ415073 | Pseudomonas phage Baskent_P5 | 37572 | 64.266 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 98.020 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus JD024 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_56 |
| PQ412991 | Pseudomonas phage UFJF_PfPro | 32700 | 58.312 | Pseudomonas | Group I | Peduoviridae | Unclassified | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens UFV 041 | High-quality | High-quality | 98.840 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_4 |
| PQ412846 | Acinetobacter phage vB_Aba_ZC3 | 45489 | 37.260 | Acinetobacter | Group I | Sichuanvirus | Sichuanvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sichuanvirus | Sichuanvirus ZC3 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ412545 | Mycobacterium phage Andre | 69117 | 66.470 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.480 | AAI-based (high-confidence) | Pegunavirus | Pegunavirus Pg1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ412544 | Streptomyces phage Quantum | 186377 | 66.722 | Streptomyces | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces lividans JI 1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_125 |