INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PQ432284	Acinetobacter phage phi5013-M1	42180	39.251	Acinetobacter	Group I	Olaviavirus	Olaviavirus	Unclassified	Buchnerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	Medium-quality	Genome-fragment	83.250	AAI-based (high-confidence)	Olaviavirus	Olaviavirus phi5013M1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_8;integrase orf_23
PQ432283	Acinetobacter phage phi4197	39359	38.825	Acinetobacter	Group I	Olaviavirus	Olaviavirus	Unclassified	Buchnerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	Medium-quality	Genome-fragment	81.010	AAI-based (high-confidence)	Olaviavirus	Olaviavirus phi4197	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_14
PQ431420	Erwinia phage EaPF7	54114	43.867	Erwinia	Group I	Fifivirus	Fifivirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora 4/82	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fifivirus	Fifivirus EaPF7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ431419	Erwinia phage EaPF9	52943	43.983	Erwinia	Group I	Loessnervirus	Loessnervirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora 4/82	Complete	High-quality	100.000	DTR (high-confidence)	Fifivirus	Fifivirus EaPF7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ429081	Pseudomonas phage vB_VIPPAEUMC02a	92031	49.341	Pseudomonas	Group I	Pakpunavirus	Pakpunavirus	Skurskavirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa ATCC 15442	High-quality	High-quality	98.950	AAI-based (high-confidence)	Pakpunavirus	Pakpunavirus vippaeumc	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_38
PQ429080	Escherichia phage vB_VIPECOTPH05B	44015	53.838	Escherichia	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli OMCS-21-1589B	High-quality	High-quality	100.000	AAI-based (high-confidence)	Drulisvirus	Drulisvirus workingina	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ429079	Escherichia phage vB_VIPECOTPH05A	45476	50.862	Escherichia	Group I	Kagunavirus	Kagunavirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli OMCS-21-1589B	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kagunavirus	Kagunavirus malou	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PQ425461	Streptococcus phage vBSeqZ-LmqsRe26-3	16165	34.655	Streptococcus	Group I	Fischettivirus	Fischettivirus	Unclassified	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus equi	High-quality	High-quality	96.870	AAI-based (high-confidence)	Fischettivirus	Fischettivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ425460	Streptococcus phage vBSeqZ-lmqsRe26-1	16154	34.679	Streptococcus	Group I	Fischettivirus	Fischettivirus	Unclassified	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus equi	High-quality	High-quality	96.810	AAI-based (high-confidence)	Fischettivirus	Fischettivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ423993	Escherichia phage vB_VIPECOMC04	45658	50.653	Escherichia	Group I	Kagunavirus	Kagunavirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli OMCS-21-1589B (clinical isolate)	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kagunavirus	Kagunavirus ohbeberoi	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic