INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PQ585404 | Escherichia phage MirsaeidiM_Esher6 | 22558 | 49.987 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Medium-quality | Genome-fragment | 56.710 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PQ582223 | Vibrio phage PVA7 | 41749 | 44.370 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio alginolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PQ582222 | Vibrio phage PVP52 | 76789 | 48.792 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio parahaemolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mardecavirus | Mardecavirus SSP002 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26 |
| PQ582221 | Vibrio phage PVA1_EC2022 | 76238 | 48.810 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio alginolyticus | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | Mardecavirus | Mardecavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ582088 | Lactococcus phage vL_311A | 21837 | 36.250 | Lactococcus | Group I | Ceduovirus | Ceduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 99.670 | AAI-based (high-confidence) | Ceduovirus | Ceduovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ581936 | Vibrio phage VPpYZU110 | 144768 | 41.881 | Vibrio | Group I | Ackermannviridae | Unclassified | Unclassified | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus VpYZU110 | Complete | High-quality | 100.000 | DTR (high-confidence) | Vapseptimavirus | Vapseptimavirus VAP7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ581935 | Vibrio phage VPpYZU81 | 42897 | 49.281 | Vibrio | Group I | Maculvirus | Maculvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus VpYZU81 | Complete | High-quality | 100.000 | DTR (high-confidence) | Maculvirus | Maculvirus F23s2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ581934 | Vibrio phage VPpYZU92 | 80670 | 45.043 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus VpYZU92 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PQ581933 | Vibrio phage VPpYZU68 | 58495 | 46.541 | Vibrio | Group I | Queuovirinae | Unclassified | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus VpYZU68 | Medium-quality | Genome-fragment | 54.740 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PQ581932 | Vibrio phage VPpYZU64 | 76153 | 48.927 | Vibrio | Group I | Mardecavirus | Mardecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus VpYZU64 | Complete | High-quality | 100.000 | DTR (high-confidence) | Mardecavirus | Mardecavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |