Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PQ797121Acinetobacter phage MRABphi224492837.936AcinetobacterGroup I BurnvirusBurnvirusUnclassifiedHirszfeldviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Acinetobacter baumannii strain MRAB10-230High-qualityHigh-quality99.930AAI-based (high-confidence) BurnvirusBurnvirus MRABphi22The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PQ793810Salmonella phage As11579747.490SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphimuriumLow-qualityGenome-fragment38.940AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_3;antirepressor orf_6;cro orf_24;integrase orf_30
PQ793809Salmonella phage As12628948.925SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphimuriumMedium-qualityGenome-fragment64.560AAI-based (high-confidence) LederbergvirusLederbergvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_16;antirepressor orf_20;cro orf_37;integrase orf_43
PQ793808Salmonella phage As14002847.307SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphimuriumHigh-qualityHigh-quality97.410AAI-based (high-confidence) LederbergvirusLederbergvirus P22The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_1;integrase orf_17;cro orf_23;antirepressor orf_40;integrase orf_44;cro orf_62;antirepressor orf_63
PQ793807Salmonella phage As12702348.603SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphimuriumMedium-qualityGenome-fragment66.170AAI-based (high-confidence) LederbergvirusLederbergvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_2;integrase orf_20;antirepressor orf_24;cro orf_40
PQ793806Salmonella phage As11695148.870SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphimuriumLow-qualityGenome-fragment41.600AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperatecro orf_17;antirepressor orf_18
PQ793804Salmonella phage As11650654.011SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphimuriumLow-qualityGenome-fragment42.650AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PQ793803Salmonella phage As11494449.726SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphimuriumLow-qualityGenome-fragment36.710AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PQ793802Salmonella phage As11889348.140SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphimuriumLow-qualityGenome-fragment46.310AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_5;antirepressor orf_8;cro orf_25;integrase orf_31
PQ793800Salmonella phage As31564350.003SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar TyphimuriumLow-qualityGenome-fragment38.540AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_14;antirepressor orf_18
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