INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PV659873	Escherichia phage WPEC1	161280	38.873	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli EC3.18	Complete	High-quality	100.000	DTR (high-confidence)	Phapecoctavirus	Phapecoctavirus anhysbys	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV659690	Pseudomonas phage vB_PaP_DMTU_1	49386	44.978	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomaonas aeruginosa	Complete	High-quality	100.000	DTR (high-confidence)	Paundecimvirus	Paundecimvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV659140	Salmonella phage vB_StyS_KFSST1	47149	45.738	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Typhimurium ATCC 13311	High-quality	High-quality	100.000	AAI-based (high-confidence)	Skatevirus	Skatevirus KFSSE2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PV659053	Salmonella phage P219	86976	38.927	Salmonella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella sp.	High-quality	High-quality	98.780	AAI-based (high-confidence)	Felixounavirus	Felixounavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV658498	Staphylococcus phage KO45	34730	34.129	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus sp.	Medium-quality	Genome-fragment	81.750	AAI-based (high-confidence)	Peeveelvirus	Peeveelvirus SA7	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_1;integrase orf_25
PV658497	Escherichia phage TOPO13	168266	35.360	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus yueel1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV658496	Pseudomonas phage TAB03	39552	62.535	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Torontovirus	Torontovirus JBD25	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_14
PV658495	Acinetobacter phage TT23	46387	37.743	Acinetobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Acinetobacter baumannii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Theraphagusvirus	Theraphagusvirus AP22	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PV657135	Salmonella phage SGP009	43086	50.230	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Gallinarum	Complete	High-quality	100.000	DTR (high-confidence)	Jerseyvirus	Jerseyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV656002	Escherichia phage vB_Eco_Hrm2	44455	50.494	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic