INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PQ821647 | Clostridium phage HMD-PC1 | 40552 | 30.563 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_13;antirepressor orf_62 |
| PQ821643 | Klebsiella phage HZJ32 | 48352 | 50.552 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae L3 | Complete | High-quality | 100.000 | DTR (high-confidence) | Webervirus | Webervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ821641 | Escherichia phage SD6 | 40091 | 49.774 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ821640 | Escherichia phage SD2 | 148955 | 37.545 | Escherichia | Group I | Justusliebigvirus | Justusliebigvirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | Justusliebigvirus | Justusliebigvirus SD2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ820062 | Riemerella phage PJX6 | 46743 | 34.957 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_1;antirepressor orf_27 |
| PQ820061 | Riemerella phage PJL1 | 46743 | 34.961 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_50;antirepressor orf_76 |
| PQ820060 | Riemerella phage PJR4 | 46817 | 34.908 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_32;antirepressor orf_58 |
| PQ820059 | Riemerella phage PJO17 | 49065 | 34.652 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_21 |
| PQ820058 | Riemerella phage PJA1 | 48313 | 34.813 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_7 |
| PQ819873 | Streptococcus phage vB_SagM-GXN1 | 176194 | 34.598 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus agalactiae | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |