INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PQ998983 | Klebsiella phage vB_KpnP_IME323-1 | 43886 | 53.805 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 99.960 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ963940 | Klebsiella phage P11 | 47959 | 50.128 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae B11 | High-quality | High-quality | 96.800 | AAI-based (high-confidence) | Webervirus | Webervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ932598 | Enterobacter phage vB_EhoP_ZX13 | 172900 | 39.790 | Enterobacter | Group I | Karamvirus | Karamvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter hormaechei | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Karamvirus | Karamvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ900653 | Sulfitobacter phage M39 | 49844 | 55.289 | Sulfitobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sulfitobacter sp. M39 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PQ900156 | Escherichia phage vB_EcoP_ShWW44 | 72444 | 42.732 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gamaleyavirus | Gamaleyavirus Shww44 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ900155 | Escherichia phage vB_Eco_CWW26 | 48021 | 48.889 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Zewailvirus | Zewailvirus ZCEC13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ898602 | Synechococcus phage S-SCSM2R | 244186 | 40.158 | Synechococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PQ898399 | Enterobacter phage SonariX | 248734 | 41.954 | Enterobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterobacter cloacae | High-quality | High-quality | 99.600 | HMM-based (lower-bound) | Karamvirus | Karamvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ890122 | Salmonella phage vB_SeT-PST5 | 111512 | 38.950 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica Thompson S25 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ885451 | Acinetobacter phage phi1_092060 | 167208 | 36.700 | Acinetobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Acinetobacter baumannii | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | Lazarusvirus | Lazarusvirus am101 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |