INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV007925 | Salmonella phage vB_SalP_TTS2 | 38786 | 50.933 | Salmonella | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Gallinarum | Complete | High-quality | 100.000 | DTR (high-confidence) | Teetrevirus | Teetrevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV007924 | Salmonella phage vB_SalS_TTS5 | 51608 | 43.110 | Salmonella | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Gallinarum | Complete | High-quality | 100.000 | DTR (high-confidence) | Tlsvirus | Tlsvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_22 |
| PV007823 | Staphylococcus phage CapO46 | 17107 | 29.082 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 96.720 | AAI-based (high-confidence) | Rosenblumvirus | Rosenblumvirus cap046 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV001668 | Mycobacterium phage MP1 | 50674 | 63.088 | Mycobacterium | Group I | Turbidovirus | Turbidovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium marinum | Complete | High-quality | 100.000 | DTR (high-confidence) | Turbidovirus | Turbidovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_33;antirepressor orf_66;immunity orf_71 |
| PQ999132 | Escherichia phage BUCT789 | 40771 | 50.901 | Escherichia | Group I | Kagunavirus | Kagunavirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli E4014 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kagunavirus | Kagunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ999099 | Arthrobacter phage GravityBall | 51100 | 60.935 | Arthrobacter | Group I | Marthavirus | Marthavirus | Unclassified | Berryhillviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Marthavirus | Marthavirus barretlemon | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ999098 | Curtobacterium phage Moss | 40110 | 71.092 | Curtobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Curtobacterium flaccumfaciens NRRL B-729 SEA | High-quality | High-quality | 90.780 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PQ999097 | Curtobacterium phage SunnyD | 41336 | 65.611 | Curtobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Curtobacterium flaccumfaciens NRRL B-729 SEA | High-quality | High-quality | 99.580 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PQ999096 | Arthrobacter phage PhluffyCoco | 38568 | 66.044 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Arthrobacter globiformis B-2979 | High-quality | High-quality | 99.420 | AAI-based (high-confidence) | Andrewvirus | Andrewvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36 |
| PQ998984 | Klebsiella phage vB_KpnP_IME309 | 43286 | 54.045 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.600 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |