INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV165875 | Mycobacterium phage Policronamos | 75894 | 62.963 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.700 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_54;immunity orf_57 |
| PV159336 | Escherichia phage W22 | 148932 | 37.572 | Escherichia | Group I | Justusliebigvirus | Justusliebigvirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | Justusliebigvirus | Justusliebigvirus PHB05 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV158447 | Aeromonas phage AhC3_1 | 232884 | 44.358 | Aeromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | High-quality | High-quality | 91.980 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV158446 | Aeromonas phage AsC4_1 | 45983 | 50.110 | Aeromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida | High-quality | High-quality | 94.520 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV156121 | Stenotrophomonas phage vB_Srh_LBjhp91a | 63966 | 60.735 | Stenotrophomonas | Group I | Bosavirus | Bosavirus | Bradleyvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas rhizophila 1-91 | Complete | High-quality | 100.000 | DTR (high-confidence) | Xooduovirus | Xooduovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV155695 | Klebsiella phage KP-C01 | 44069 | 53.897 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 8110W-B | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV155638 | Cobetia phage Carin-5 | 154621 | 37.339 | Cobetia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Cobetia marina DSMZ 4741 | Medium-quality | Genome-fragment | 85.690 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV153712 | Salmonella phage vB_GS156 | 48552 | 41.733 | Salmonella | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Infantis | High-quality | High-quality | 96.540 | AAI-based (high-confidence) | Tlsvirus | Tlsvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_19 |
| PV146253 | Vibrio phage SUMAE | 71257 | 43.780 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio anguillarum VA11 | Low-quality | Genome-fragment | 46.130 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV138155 | Proteus phage T2-2 | 42194 | 41.613 | Proteus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis Y22 | Complete | High-quality | 100.000 | DTR (high-confidence) | Novosibovirus | Novosibovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |