INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV173013 | Klebsiella phage P12 | 40523 | 53.034 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae B12 | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV173012 | Klebsiella phage P07 | 41634 | 52.642 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae B07 | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV172160 | Staphylococcus phage StAP1 | 134226 | 29.992 | Staphylococcus | Group I | Silviavirus | Silviavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | Complete | High-quality | 100.000 | DTR (high-confidence) | Silviavirus | Silviavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_37 |
| PV171465 | Vibrio phage VPBES | 54898 | 43.162 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio anguillarum BES | Complete | High-quality | 100.000 | DTR (high-confidence) | Strymvirus | Strymvirus strym | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_11;cro orf_67 |
| PV171464 | Vibrio phage VPALA | 129979 | 44.059 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio anguillarum ALA | Medium-quality | Genome-fragment | 84.180 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV165920 | Edwardsiella phage vB_EtA_WCT72P1 | 43508 | 47.104 | Edwardsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella tarda E24.1 | High-quality | High-quality | 96.110 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PV165919 | Edwardsiella phage vB_EtA_WAG25P1 | 43999 | 47.137 | Edwardsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella tarda E24.1 | High-quality | High-quality | 97.200 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PV165918 | Edwardsiella phage vB_EtA_DT115P1 | 44166 | 47.224 | Edwardsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella tarda E24.1 | High-quality | High-quality | 97.560 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PV165877 | Streptomyces phage CeilingFan | 132946 | 49.324 | Streptomyces | Group I | Karimacvirus | Karimacvirus | Boydwoodruffvirinae | Stanwilliamsviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus ATCC 10137 | Complete | High-quality | 100.000 | DTR (high-confidence) | Karimacvirus | Karimacvirus karimac | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV165876 | Gordonia phage BigShaq | 76650 | 58.592 | Gordonia | Group I | Montyvirus | Montyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Montyvirus | Montyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |