INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV929972 | Staphylococcus phage STAE-4 | 85972 | 31.588 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus hyicus SC366 | High-quality | High-quality | 97.550 | AAI-based (high-confidence) | lytic | ||||
| PV929971 | Staphylococcus phage STAM-1 | 84636 | 31.618 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus hyicus SC366 | High-quality | High-quality | 96.040 | AAI-based (high-confidence) | lytic | ||||
| PV929875 | Acinetobacter phage Staunch-TS1 | 44929 | 37.659 | Acinetobacter | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii (drug-resistant/XDR clinical isolate) | Complete | High-quality | 100.000 | DTR (high-confidence) | Helsinkivirus | Helsinkivirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV928965 | Pseudomonas phage vB_PaeP_EG1 | 45614 | 52.598 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bruynoghevirus | Bruynoghevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV928011 | Acinetobacter phage vB_Aba_EA1 | 44821 | 37.750 | Acinetobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Acinetobacter baumannii | High-quality | High-quality | 99.670 | AAI-based (high-confidence) | Sichuanvirus | Sichuanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV927347 | Enterococcus phage vB_Ela_1E1 | 18211 | 33.853 | Enterococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus sp. | High-quality | High-quality | 99.690 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV920691 | Escherichia phage vB_EcoM_ED | 91069 | 47.533 | Escherichia | Group I | Punavirus | Punavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Medium-quality | Genome-fragment | 88.790 | AAI-based (high-confidence) | Punavirus | Punavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_13;parA orf_24;cro orf_65;cro orf_66 |
| PV920661 | Escherichia phage EW1 | 49619 | 45.636 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli MG1655 | High-quality | High-quality | 98.730 | AAI-based (high-confidence) | Tunavirus | Tunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV920660 | Rhodococcus phage Prosser1 | 80548 | 56.878 | Rhodococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Rhodococcus sp. MSC1_016 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_61 |
| PV920659 | Sphingopyxis phage Prosser2 | 62621 | 59.950 | Sphingopyxis | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sphingopyxis sp. MSC1_008 | High-quality | High-quality | 98.240 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_62 |