INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV268491 | Pseudomonas phage vB_Pae_BCPPae_001 | 42589 | 62.190 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa 017/8-10/R | High-quality | High-quality | 98.880 | AAI-based (high-confidence) | Phikmvvirus | Phikmvvirus PT5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV261948 | Bacillus phage vB_BliM_Yucatan | 147395 | 38.976 | Bacillus | Group I | Herelleviridae | Unclassified | Unclassified | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus licheniformis | High-quality | High-quality | 96.100 | AAI-based (high-confidence) | Siophivirus | Siophivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV261925 | Synechococcus phage RB11-B | 210127 | 39.645 | Synechococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Synechococcus sp. MW02 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV261924 | Synechococcus phage RN05-S | 206548 | 39.596 | Synechococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Synechococcus sp. MW02 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV261923 | Synechococcus phage WH11-B | 42637 | 42.299 | Synechococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 95.240 | AAI-based (high-confidence) | Qadamvirus | Qadamvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV261922 | Synechococcus phage 7B11-B | 44327 | 42.227 | Synechococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | Complete | High-quality | 100.000 | DTR (high-confidence) | Qadamvirus | Qadamvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV258715 | Aeromonas phage LA93P2 | 52064 | 52.898 | Aeromonas | Group I | Pahsextavirus | Pahsextavirus | Nefertitivirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas dhakensis A24.1T | High-quality | High-quality | 98.240 | AAI-based (high-confidence) | Shantouvirus | Shantouvirus LA93P1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV258714 | Aeromonas phage LA93P1 | 52196 | 52.793 | Aeromonas | Group I | Shantouvirus | Shantouvirus | Nefertitivirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas dhakensis A24.1T | High-quality | High-quality | 98.490 | AAI-based (high-confidence) | Shantouvirus | Shantouvirus LA93P1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV256515 | Pseudomonas phage P-2FD | 40453 | 58.510 | Pseudomonas | Group I | Bifseptvirus | Bifseptvirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas psychrophila | Complete | High-quality | 100.000 | DTR (high-confidence) | Bifseptvirus | Bifseptvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_24 |
| PV256270 | Klebsiella phage klb_E | 44251 | 53.124 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae | High-quality | High-quality | 99.290 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_56;integrase orf_70 |