INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV295200 | Escherichia phage vB_Eco_BCPEco_001 | 170117 | 35.234 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 002/1-14/R | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus shfml11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV292302 | Escherichia phage Jgk1 | 74059 | 43.719 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PV290134 | Staphylococcus phage vB_SaRS_FS19-1 | 152424 | 30.137 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus JP19 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayvirus | Kayvirus P108 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV287714 | Escherichia phage HMD-9 | 166479 | 35.546 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.910 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV287707 | Klebsiella phage UHKP | 62542 | 56.612 | Klebsiella | Group I | Lastavirus | Lastavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PV287706 | Escherichia phage Midge | 29617 | 54.580 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli 4s | High-quality | High-quality | 93.720 | AAI-based (high-confidence) | Eganvirus | Eganvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28 |
| PV277658 | Acinetobacter phage BUCT800 | 42018 | 39.321 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii AB03 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Friunavirus | Friunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV277657 | Acinetobacter phage BUCT775 | 41005 | 39.339 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii B3808 | High-quality | High-quality | 99.000 | AAI-based (high-confidence) | Friunavirus | Friunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV277656 | Serratia phage BUCT805 | 42067 | 46.711 | Serratia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens SM04 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Bonzeevirus | Bonzeevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV268492 | Pseudomonas phage vB_Pae_BCPPae_004 | 72073 | 54.899 | Pseudomonas | Group I | Litunavirus | Litunavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa 017/8-10/R | High-quality | High-quality | 98.960 | AAI-based (high-confidence) | Litunavirus | Litunavirus Ab09 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |