INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV483189 | Pantoea phage G19 | 72819 | 56.109 | Pantoea | Group I | Geeundevigintivirus | Geeundevigintivirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pantoea agglomerans | Complete | High-quality | 100.000 | DTR (high-confidence) | Geeundevigintivirus | Geeundevigintivirus G19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV477980 | Pseudomonas phage Laces98 | 41870 | 58.151 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas putida ISAT203 | Complete | High-quality | 100.000 | DTR (high-confidence) | Waldovirus | Waldovirus plaquesplease | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV477759 | Mycobacterium phage JIND1 | 71234 | 55.976 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium sp. | High-quality | High-quality | 99.280 | AAI-based (high-confidence) | Papyrusvirus | Papyrusvirus send513 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV477269 | Shigella phage vB_1081 | 5529 | 45.777 | Shigella | Group II | Gequatrovirus | Gequatrovirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Shigella sonnei 1081 | High-quality | High-quality | 95.380 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| PV474729 | Staphylococcus phage phiIPLA-LAVI | 132180 | 29.887 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus aureus | Complete | High-quality | 100.000 | DTR (high-confidence) | Silviavirus | Silviavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_157 |
| PV472529 | Pseudomonas phage vB_PaeP_GZMU_A1002 | 63643 | 60.302 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa | High-quality | High-quality | 99.270 | AAI-based (high-confidence) | Kochitakasuvirus | Kochitakasuvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV472050 | Pseudomonas phage MIZ-Pa99 | 209813 | 49.422 | Pseudomonas | Group I | Straboviridae | Unclassified | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 99.340 | AAI-based (high-confidence) | Elvirus | Elvirus EL | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV471308 | Acinetobacter phage HN_Aba_01 | 44416 | 37.939 | Acinetobacter | Group I | Burnvirus | Burnvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii Aba_01 | High-quality | High-quality | 98.810 | AAI-based (high-confidence) | Burnvirus | Burnvirus Aba01 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV469800 | Escherichia phage HMD-P10 | 87993 | 38.925 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus shy | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV469479 | Klebsiella phage vB_Kpn_001_Koku | 38232 | 50.855 | Klebsiella | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae subsp. pneumoniae | High-quality | High-quality | 95.780 | AAI-based (high-confidence) | Teetrevirus | Teetrevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |