Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PV506377Xanthomonas phage vB_XORNC024660861.030XanthomonasGroup I TsukubavirusTsukubavirusKantovirinaeAnamaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Xanthomonas oryzae PX079 (Phillipine race 3)High-qualityHigh-quality97.690AAI-based (high-confidence) TsukubavirusTsukubavirus XPP1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV504776Bacillus phage 268TH0034588743.668BacillusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus subtilisHigh-qualityHigh-quality100.000AAI-based (high-confidence) RivavirusRivavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_40
PV504775Bacillus phage 268TH0084357842.241BacillusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus subtilisHigh-qualityHigh-quality97.850AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV501192Vibrio phage vB-Vp-ZX10187724448.845VibrioUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Vibrio parahaemolyticus Vp1809High-qualityHigh-quality100.000AAI-based (high-confidence) MardecavirusMardecavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV491271Enterococcus phage XWef14306434.929EnterococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Enterococcus faecium XW113High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PV485168Vibrio phage vB-Vv-ZX42903719450.073VibrioUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Vibrio vulnificus Vv4290High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV485104Klebsiella phage Pkp-13845550.566KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniaeCompleteHigh-quality100.000DTR (high-confidence) KayfunavirusKayfunavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV484560Campylobacter phage CBP217773127.448CampylobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Campylobacter jejuni and Campylobacter coliHigh-qualityHigh-quality99.450AAI-based (high-confidence) FirehammervirusFirehammervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV484559Campylobacter phage CBP17810127.187CampylobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Campylobacter jejuni and Campylobacter coliLow-qualityGenome-fragment43.700AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PV484558Campylobacter phage CBP110049427.612CampylobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Campylobacter jejuni and Campylobacter coliMedium-qualityGenome-fragment56.240AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
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