Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PV540239Klebsiella phage BUCT7914838848.870KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae K4069CompleteHigh-quality100.000DTR (high-confidence) SircambvirusSircambvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV539788Pseudomonas phage phPLST7320354.671PseudomonasGroup I LitunavirusLitunavirusMigulavirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) LitunavirusLitunavirus PlstCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV539787Pseudomonas phage phPSJM4498952.184PseudomonasGroup I BruynoghevirusBruynoghevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality99.260AAI-based (high-confidence) BruynoghevirusBruynoghevirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV539235Klebsiella phage vB_Kpn_RAH14678451.379KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae KP26High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_69
PV536185Pseudomonas phage PaoP16636455.667PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PAO1CompleteHigh-quality100.000DTR (high-confidence) PbunavirusPbunavirus LS1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV536160Acinetobacter phage RM_A24242837.758AcinetobacterGroup I CairovirusCairovirusUnclassifiedHirszfeldviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Acinetobacter baumanniiHigh-qualityHigh-quality94.330AAI-based (high-confidence) CairovirusCairovirus RMA2The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV535314Proteus phage vB_PMG_YP18943135.318ProteusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified chicken and sheepCompleteHigh-quality100.000DTR (high-confidence) PrivateervirusPrivateervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV533664Klebsiella phage vB_KpiP_JZBo17152044.583KlebsiellaGroup I KaypoctavirusKaypoctavirusEnquatrovirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella sp.High-qualityHigh-quality98.800AAI-based (high-confidence) KaypoctavirusKaypoctavirus Jzbo1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV533660Escherichia phage 8993380451.503EscherichiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Escherichia coli U899 (uropathogenic UPEC)High-qualityHigh-quality100.000AAI-based (high-confidence) PeduovirusPeduovirus GMG73Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_18;immunity orf_19
PV528706Vibrio phage VapS4720042.819VibrioGroup II InoviridaeUnclassifiedUnclassifiedInoviridaeTubulaviralesFaserviricetesHofneiviricotaLoebviraeFloreoviria Vibrio alginolyticus 4High-qualityHigh-quality90.260AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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