INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PV544178	Enterococcus phage RioGrande	40782	34.488	Enterococcus	Group I	Efquatrovirus	Efquatrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ATCC 19433	High-quality	High-quality	100.000	AAI-based (high-confidence)	Efquatrovirus	Efquatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV544177	Enterococcus phage Revolver	135117	36.920	Enterococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Enterococcus faecalis ATCC 33186	High-quality	High-quality	92.340	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
PV544176	Enterococcus phage Pumpjack	57668	39.934	Enterococcus	Group I	Saphexavirus	Saphexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ATCC 47077	High-quality	High-quality	100.000	AAI-based (high-confidence)	Saphexavirus	Saphexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV544175	Enterococcus phage PricklyPear	41153	34.515	Enterococcus	Group I	Efquatrovirus	Efquatrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ATCC 33186	High-quality	High-quality	100.000	AAI-based (high-confidence)	Efquatrovirus	Efquatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV544174	Enterococcus phage LoneStar	40336	34.788	Enterococcus	Group I	Efquatrovirus	Efquatrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ATCC 29212	High-quality	High-quality	98.990	AAI-based (high-confidence)	Efquatrovirus	Efquatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV544173	Enterococcus phage Haystack	39891	34.649	Enterococcus	Group I	Efquatrovirus	Efquatrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ATCC 33186	High-quality	High-quality	97.910	AAI-based (high-confidence)	Efquatrovirus	Efquatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV544172	Enterococcus phage GiddyUp	57430	39.795	Enterococcus	Group I	Saphexavirus	Saphexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ATCC 29212	High-quality	High-quality	100.000	AAI-based (high-confidence)	Saphexavirus	Saphexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_52
PV544171	Enterococcus phage AllMyExes	142989	35.808	Enterococcus	Group I	Kochikohdavirus	Kochikohdavirus	Brockvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ATCC 33186	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kochikohdavirus	Kochikohdavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV544170	Enterococcus phage Alamo	41578	34.415	Enterococcus	Group I	Efquatrovirus	Efquatrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ATCC 29212	High-quality	High-quality	100.000	AAI-based (high-confidence)	Efquatrovirus	Efquatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV540240	Escherichia phage BUCT788	40473	49.838	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli E4002	Complete	High-quality	100.000	DTR (high-confidence)	Kayfunavirus	Kayfunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic