Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PV748133Acinetobacter phage PhiAb2-SL17987740.331AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter baumannii Abau2High-qualityHigh-quality97.100AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV748132Acinetobacter phage PhiAb1-PL24373639.052AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter baumannii Abau1Medium-qualityGenome-fragment57.780HMM-based (lower-bound) LubinvirusLubinvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV748131Acinetobacter phage PhiAb1-PL14391440.083AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter baumannii Abau1High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_1
PV748130Acinetobacter phage PhiAb1-SL27934440.404AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter baumannii Abau1High-qualityHigh-quality96.800AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV748129Acinetobacter phage PhiAb1-SL17993040.327AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter baumannii Abau1High-qualityHigh-quality97.150AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV745554Caulobacter phage BL6422463465.959CaulobacterGroup I PoindextervirusPoindextervirusUnclassifiedJeanschmidtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Caulobacter vibrioides CB15High-qualityHigh-quality100.000AAI-based (high-confidence) PoindextervirusPoindextervirus rogueCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_138
PV740454Vibrio phage CZ0124713841.312VibrioGroup I StraboviridaeUnclassifiedUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio natriegens Vmax (CCTCC PV 2024008)High-qualityHigh-quality93.120AAI-based (high-confidence) MylasvirusMylasvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV733669Escherichia phage ES2-BCU-35372845.827EscherichiaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli (multidrug-resistant clinical strain)CompleteHigh-quality100.000DTR (high-confidence) LoughboroughvirusLoughboroughvirus ZCSE2The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV733668Pseudomonas phage NCVTCBPA1708812954.763PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) NankokuvirusNankokuvirus KPP10Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV730305Pseudomonas phage MHN14575452.537PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa A10 (clinical)High-qualityHigh-quality100.000AAI-based (high-confidence) BruynoghevirusBruynoghevirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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