INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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Genus (TaxMyPhage)

CheckV quality

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PV755396	Mycobacterium phage Bhagsy	48195	67.030	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.370	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus ksquared	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_32;antirepressor orf_35
PV755395	Mycobacterium phage EnzoK	50873	63.531	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.980	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_69
PV755394	Mycobacterium phage Violac	58196	61.324	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_37;integrase orf_39;immunity orf_43;antirepressor orf_45
PV755393	Mycobacterium phage Kari	47523	67.273	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.990	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus fishburne	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_30;immunity orf_31;antirepressor orf_34
PV754127	Xanthomonas phage PhiXhv-28	46883	61.863	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas hortorum pv. vitians AB16734deltaLPS3	High-quality	High-quality	99.960	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
PV754031	Pseudomonas phage Bobae	278381	36.941	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa Ps33 (clinical isolate)	High-quality	High-quality	99.300	AAI-based (high-confidence)	Phikzvirus	Phikzvirus phiKZ	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV752216	Pseudomonas phage vB_PaeP_YZ2	43346	62.276	Pseudomonas	Group I	Phikmvvirus	Phikmvvirus	Krylovirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	Complete	High-quality	100.000	DTR (high-confidence)	Phikmvvirus	Phikmvvirus S1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV752215	Pseudomonas phage vB_PaeP_YQZQ	43346	62.248	Pseudomonas	Group I	Phikmvvirus	Phikmvvirus	Krylovirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	Complete	High-quality	100.000	DTR (high-confidence)	Phikmvvirus	Phikmvvirus S1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV752214	Pseudomonas phage vB_PaeP_QSZH	43346	62.243	Pseudomonas	Group I	Phikmvvirus	Phikmvvirus	Krylovirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	Complete	High-quality	100.000	DTR (high-confidence)	Phikmvvirus	Phikmvvirus S1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV752213	Pseudomonas phage vB_PaeM_ZGC	92293	49.243	Pseudomonas	Group I	Pakpunavirus	Pakpunavirus	Skurskavirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	Complete	High-quality	100.000	DTR (high-confidence)	Pakpunavirus	Pakpunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_15