Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PV940997Gordonia phage Blondies4614960.502GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia terrae CAG3High-qualityHigh-quality99.960AAI-based (high-confidence) EmalynvirusEmalynvirus trojeCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV940996Mycobacterium phage Ablatia15547964.653MycobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality97.450AAI-based (high-confidence) BixzunavirusBixzunavirus quasimodoCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV940995Gordonia phage Alephilan6757558.217GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia rubripertincta NRRL B-16540High-qualityHigh-quality99.620AAI-based (high-confidence) LambovirusLambovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV940994Microbacterium phage MsUbiquitous4171466.735MicrobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Microbacterium foliorum NRRL B-24224High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PV940993Arthrobacter phage AnnabelLee3963558.867ArthrobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Arthrobacter globiformis B-2979Medium-qualityGenome-fragment68.730HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingslytic
PV940992Microbacterium phage HairyMan4128862.347MicrobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Microbacterium foliorum NRRL B-24224High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PV940991Gordonia phage Jamemuya196519957.696GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia rubripertincta NRRL B-16540High-qualityHigh-quality96.140AAI-based (high-confidence) LambovirusLambovirus genamy16Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_6
PV940990Gordonia phage Astralis6505257.678GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia rubripertincta NRRL B-16540High-qualityHigh-quality95.910AAI-based (high-confidence) LambovirusLambovirus novasharksCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_6
PV940989Gordonia phage RazorC6520757.649GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia rubripertincta NRRL B-16540High-qualityHigh-quality96.140AAI-based (high-confidence) LambovirusLambovirus novasharksCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_6
PV940988Mycobacterium phage Alkhayr7079165.333MycobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.310AAI-based (high-confidence) CorndogvirusCorndogvirus vagabondCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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