INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

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Genus (TaxMyPhage)

CheckV quality

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PV941750	Lactococcus phage AM2-MF12	29999	34.584	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus cremoris	High-quality	High-quality	98.870	AAI-based (high-confidence)	Skunavirus	Skunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV941749	Lactococcus phage AD1-ME6	29359	34.838	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus cremoris	High-quality	High-quality	96.820	AAI-based (high-confidence)	Skunavirus	Skunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV941032	Pseudomonas phage Atpa002	66227	55.633	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa PAO1K	Complete	High-quality	100.000	DTR (high-confidence)	Pbunavirus	Pbunavirus LS1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV941004	Gordonia phage Mima20	67342	58.206	Gordonia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Gordonia rubripertincta NRRL B-16540	High-quality	High-quality	99.280	AAI-based (high-confidence)	Lambovirus	Lambovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV941003	Gordonia phage Avian	65287	57.622	Gordonia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Gordonia rubripertincta NRRL B-16540	High-quality	High-quality	96.260	AAI-based (high-confidence)	Lambovirus	Lambovirus genamy16	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_6
PV941002	Streptomyces phage Axiom	51703	67.170	Streptomyces	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Streptomyces lividans JI 1326	High-quality	High-quality	100.000	AAI-based (high-confidence)	Janusvirus	Janusvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_28;integrase orf_50
PV941001	Gordonia phage Zareef	45315	61.814	Gordonia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Gordonia terrae NRRL B-16283	High-quality	High-quality	97.780	AAI-based (high-confidence)	Aziravirus	Aziravirus azira	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV941000	Mycobacterium phage Matsumoto	154995	64.669	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.150	AAI-based (high-confidence)	Bixzunavirus	Bixzunavirus quasimodo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV940999	Arthrobacter phage MaterMagnus	53069	62.664	Arthrobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Arthrobacter globiformis B-2979	High-quality	High-quality	100.000	AAI-based (high-confidence)	Richievirus	Richievirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_36;integrase orf_40
PV940998	Mycobacterium phage JulietS	153525	64.691	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.230	AAI-based (high-confidence)	Bixzunavirus	Bixzunavirus qbert	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_41