INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PX116593 | Citrobacter phage vB_CbrP_HGW_001 | 39389 | 50.039 | Citrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Citrobacter braakii GW-Imi-1b1 | High-quality | High-quality | 99.030 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PX116399 | Escherichia phage Eco-MTCMU-01 | 44849 | 45.134 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli ATCC 25922 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rodentiumvirus | Rodentiumvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PX116174 | Acinetobacter phage Abacus | 102539 | 37.346 | Acinetobacter | Group I | Saclayvirus | Saclayvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii AB4932 | Complete | High-quality | 100.000 | DTR (high-confidence) | Saclayvirus | Saclayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX116173 | Acinetobacter phage Spandel | 103863 | 37.221 | Acinetobacter | Group I | Saclayvirus | Saclayvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii MAR610 | Complete | High-quality | 100.000 | DTR (high-confidence) | Saclayvirus | Saclayvirus Ab121 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX116155 | Proteus phage P794 | 33204 | 40.465 | Proteus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Proteus mirabilis | High-quality | High-quality | 97.900 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_28 |
| PX114817 | Pseudomonas phage phQ1 | 302434 | 51.108 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. | High-quality | High-quality | 98.860 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX111320 | Acinetobacter phage Arcade | 104107 | 37.438 | Acinetobacter | Group I | Saclayvirus | Saclayvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii MAR15-4767 | Complete | High-quality | 100.000 | DTR (high-confidence) | Saclayvirus | Saclayvirus TAC1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX111319 | Acinetobacter phage Crocket | 105776 | 37.717 | Acinetobacter | Group I | Saclayvirus | Saclayvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii MAR13-452 | Complete | High-quality | 100.000 | DTR (high-confidence) | Wulsvirus | Wulsvirus Rocket | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX111318 | Acinetobacter phage Pinnacle | 104316 | 37.454 | Acinetobacter | Group I | Saclayvirus | Saclayvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii MAR610 | Complete | High-quality | 100.000 | DTR (high-confidence) | Saclayvirus | Saclayvirus TAC1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX111317 | Acinetobacter phage Architrave | 100947 | 37.513 | Acinetobacter | Group I | Saclayvirus | Saclayvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii MAR14-500 | Complete | High-quality | 100.000 | DTR (high-confidence) | Saclayvirus | Saclayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |